Dear Francis :
If the flow divides into two separate reaches, then you should model them as two separate conveyance areas. The multiple opening option is for bridges openings that are closely connected, where the conveyance can balance through them quite easily.
Note that we have a split flow example on our website that demonstrates how to do this.
If you have any additional questions or need any further information, please contact me again.
Sincerely,
Chris E. Maeder, M.S.
Senior Technical Engineer
chris.maeder@bossintl.com