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Note that I reviewed your model, and some of the links are quite short. I believe that this is what is causing instabilities in your model.
Also, the reporting time step is a bit too large (5 minutes) and hence the model output is missing the peak discharge.
I have modified your model, setting the routing and reporting time step to 30 seconds. In addition, I set a lengthening time step of 5 seconds so that some of the very short links are artifically lengthened (without adversely affecting the model results). The model results appear to be much more stable and appear to be what you were looking for.
I have attached the updated model for you.
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